1. Population Genetics Group Provides information about the laboratory's work in population genetics. Includes CIL tools, staff details, and related links. http://popgen.well.ox.ac.uk/

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2. Publications:Molecular Evolution & Population Genetics Links to a series of papers available as extracts and for full text download, from the University of Southern California. http://www-hto.usc.edu/papers/abstracts/lists/molecularEvolution.html

Available for Downloading/Viewing Ancestral inference in population genetics Calibrating the Clock: Using stochastic processes to measure the Rate of Evolution A Central Limit Theorem for Parsimony Length of Trees Authors: Mike Steel, Larry Goldstein, Michael S. Waterman Coalescents and Genealogical Structure Under Neutrality Computational Methods for the Coalescent The distribution of rare alleles The Ewens Sampling Formula Markov chain Monte Carlo in population genetics A Mathematical Analysis of in Vitro Authors: Fengzhu Sun, David Galas, Michael S. Waterman The Polymerase Chain Reaction and Branching Processes Author: Fengzhu Sun Sampling Theory for Neutral Alleles in a Varying Environment Simulating probability distributions in the coalescent Unrooted genealogical tree probabilities in the infinitely-many-sites model Whole Genome Amplification of Single Cells: Mathematical Analysis of PEP and Tagged PCR Authors: Fengzhu Sun, Norman Arnheim, Michael S. Waterman Previous Level USC Computational Biology Home Page /papers/abstracts/lists/molecularEvolution.html

3. Population Genetics - Wikipedia, The Free Encyclopedia population genetics is the study of the distribution of and change in allele population genetics was a vital ingredient in the modern evolutionary http://en.wikipedia.org/wiki/Population_genetics

Population genetics From Wikipedia, the free encyclopedia. Population genetics is the study of the distribution of and change in allele frequencies under the influence of the five evolutionary forces: natural selection genetic drift mutation migration and nonrandom mating . It also takes account of population subdivision and population structure in space. As such, it attempts to explain such phenomena as adaptation and speciation . Population genetics was a vital ingredient in the modern evolutionary synthesis , its primary founders were Sewall Wright J. B. S. Haldane and Ronald Fisher , who also laid the foundations for the related discipline of quantitative genetics Contents Scope and theoretical considerations Population geneticists See also References ... edit Scope and theoretical considerations Perhaps the most significant "formal" achievement of the modern evolutionary synthesis has been the framework of mathematical population genetics. Indeed some authors (Beatty 1986) would argue that it defines core of the modern synthesis. Lewontin (1974) outlined the theoretical task for population genetics. He imagined two spaces: a "genotypic space" and a "phenotypic space". The challenge of a

4. PopGen HomePage Software that models population genetics with emphasis on genetic drift, selection, and migration. http://cc.oulu.fi/~jaspi/popgen/popgen.htm

Welcome to PopGen 1.0 1. What is PopGen PopGen is a simulation program designed to clarify various population genetic events. It is aimed mainly for teaching purposes. It has been programmed by Jouni Aspi using Microsoft's Visual Basic. The code is based on previous GW-Basic and QuickBasic programs by Jaakko Lumme and Jouni Aspi. 2. General description With PopGen you can simulate some deterministic and stochastic population genetic processes in a simple one locus, two allele system. There are two alleles A1 and A2. Frequency of allele A1 is p and frequency of allele A2 is q. Genotypes of individuals and their frequencies are: Genotype A A A A A A Frequency p q With the models of PopGen you can study how these allele frequencies are affected by: Genetic drift Selection Migration You can also study sample sizes you need to detect significant deviations from Hardy-Weinberg proportions, when: The studied population is divided to two subpopulations 2. Allele frequencies are not similar in different sexes 3. The mating is not random, but there is some inbreeding in the population 3. Download PopGen for Windows is now available for Windows 3.x and Windows'95. See

5. Essentials Of Genetics [M.Tevfik DORAK] Provides a range of notes including landmarks, basic terms and rules, chromosomes and genes, population genetics, viral and bacterial genetics, and plant genetics. Includes links to related resources . http://dorakmt.tripod.com/genetics/genetics.html

Back to Evolution Back to Biostatistics Back to HLA Back to MHC ... Homepage ESSENTIALS OF GENETICS M.Tevfik DORAK Landmarks in the History of Genetics Basic Genetic Terms and Rules Glossary Chromosomes and Genes ... Possible Misunderstandings in Genetics Internet Links Genetics Virtual Library Biomedical Life Long Learning (Online Genetics Courses) BBC Adult Learning BBC-OU Learning Zone Genetics Education: ROCHE GLAXO WELLCOME TRUST Dictionary of Genetic Terms ... Genetic Animations Online Books Introduction to Genetic Analysis Modern Genetic Analysis Mouse Genetics Human Genome Epidemiology ... Genetics in WikiPedia Genetics in WikiBooks Encyclopedia of Genetics Encyclopedia of Life Sciences M.Tevfik Dorak , B.A. ( Hons ), M.D., Ph.D. Last updated on 23 Febr Back to Evolution Back to Biostatistics Back to HLA Back to MHC ... Homepage

6. Population Biology Simulations population genetics. Wahlund effect and Fstatistics This applet illustrates the Wahlund effect and partitioning of genetic diversity for five http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

7. Talk:Population Genetics - Wikipedia, The Free Encyclopedia Given that all (well, most) modern population genetics revolves around coalesence In fact we should probably reword the page, population genetics didn t http://en.wikipedia.org/wiki/Talk:Population_genetics

Talk:Population genetics From Wikipedia, the free encyclopedia. This article is part of WikiProject Evolutionary biology , an attempt at building a useful set of articles on evolutionary biology and its associated subfields such as population genetics molecular evolution phylogenetics evolutionary developmental biology . It is distinct from the WikiProject Tree of Life in that it attempts to cover patterns, process and theory rather than systematics and taxonomy . If you would like to participate, there are some suggestions on this page (see also Wikipedia:Contributing FAQ for more information) or visit WikiProject Evolutionary biology Contents The Coalescent Mayr and Dobzhansky Recruiting for Wikibooks Biology book(s) Dysgenics ... edit The Coalescent Given that all (well, most) modern population genetics revolves around coalesence theory ( The Coalescent ), there really ought to be a page....There is (for example) already a page on Ewens's sampling formula DJO 22:24, 19 Apr 2005 (UTC) Except that the word the should probably not be included in the article title, and if it's included, coalescent should probably have a lower-case initial c Michael Hardy 22:50, 19 Apr 2005 (UTC)

8. What Is Population Genetics What is population genetics? The genetical study of the process of evolution http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

9. Population Genetics population genetics by Knud Christensen. Division of Animal Genetics Introduction, quantitative versus qualitative (Mendelian) genetics. Chapter 2. http://www.kursus.kvl.dk/shares/vetgen/_Popgen/genetics/genetik.htm

Population genetics by Knud Christensen Division of Animal Genetics Contents Chapter 1. Introduction, quantitative versus qualitative (Mendelian) genetics Chapter 2. Hardy-Weinberg law for gene frequency stability in large populations Chapter 3. Deviations from Hardy-Weinberg equilibrium Chapter 4. Relationship and inbreeding Chapter 5. Test of simple genetic hypotheses, experimental or field data Chapter 6. Definition of quantitative traits, breeding values and heritability Chapter 7. Estimation of breeding values Chapter 8. Genetic changes by selection Chapter 9. Inbreeding, crossing and bred structure Chapter 10. Chromosomes and chromosome aberrations Chapter 11. Genetics of hair and coat colour in mammals (under construction) Chapter 12. Estimation- and bio-technology and disease resistance Chapter 13. Exercises and solutions, in Danish Chapter 14. Genetic calculations, applets and other programs Chapter 15. Input to genetic discussion club or former input Introduction The present genetics notes are produced as a substitute for ' Veterinary Genetics ' by FW.Nicolas, Oxford University Press, 1989. This book was not available after 1995.

10. Quantitative Genetics Resources Estimation of Genetic Parameters . L. R. Schaeffer, University of Guelph. EEB 348 population genetics . Kent Holsinger, Univ. Conn. Genomes http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

11. Introduction To Evolutionary Biology result of population subdivision. Most organisms have a limited dispersal capability, so their mate will be chosen from the local population. http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

12. EEB 348 -- Population Genetics EEB 348 population genetics. Overvieew Textbook Lecture Schedule Readings Lecture Notes Resources Home. population genetics. Spring, 2004 http://darwin.eeb.uconn.edu/eeb348/

Population Genetics Spring, 2004 Instructor: Kent E. Holsinger Office: TLS 112 Phone: E-mail: kent@darwin.eeb.uconn.edu Office Hours: by appointment Teaching Assistant: Robynn Shannon Office: TLS 461 Phone: E-mail: dshannon01@snet.net Office Hours: by appointment Lectures: MWF, 9:00AM, TLS 301 Emergency closing information What? You were expecting information about the Spring 2006 edition of this course already? I probably won't have any information available until early August. Until then, you can amuse yourself by looking at the schedule, notes, and readings from the Spring 2004 edition, if you're so inclined. Announcements August 2005 Sun Mon Tue Wed Thu Fri Sat Archives April 2004 March 2004 February 2004 January 2004 Recent Entries AMOVA Project #3 Multigene family notes (final) Multigene family notes ... Substitution patterns Receive Update Notifications Notes and materials provided here are provided under a Creative Commons License

13. Hardy-Weinberg Equilibrium evolution depends upon knowledge of population genetics. One of the more difficult concepts to understand when studying population genetics is http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

14. Population Genetics Web Pages Human Biology population genetics Web Pages. Hardy Weinberg Equation of population genetics Direct Allele Frequency Calculation (codominant trait) http://www.people.virginia.edu/~rjh9u/popgenes.html

Human Biology: Population Genetics Web Pages Hardy Weinberg Equation of Population Genetics Direct Allele Frequency Calculation (co-dominant trait) Indirect Allele Frequency Calculation (recessive trait) H-W Applied to 3 Alleles at a Gene Table of Simple Genotype Frequencies Graphic Form H-W Calculation Spreadsheet (requires a plug-in) Using H-W to Determine Dominant or Recessive MN Blood Group and Hardy Weinberg MNSs Allele Frequencies PKU and CF Frequencies ... Lactose Intolerance Frequencies Class Experiment on Hardy-Weinberg Fall, 1995 Fall, 1996 Fall, 1997 Fall, 1998 ... Sickle-Cell Hemoglobin This document maintained by Robert J. Huskey Last updated on October 13, 1998.

15. Human Population Genetics Human population genetics Links http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

16. Hardy Weinberg Equation Hardy Weinberg Equation of population genetics. Assumptions. large population to insure no sampling error from one generation to the next http://www.people.virginia.edu/~rjh9u/hwequa.html

Hardy Weinberg Equation of Population Genetics Assumptions large population - to insure no sampling error from one generation to the next random mating - no assortive mating or mating by genotype no mutations - or mutational equilbrium even new mutations have little effect on allele frequencies from one generation to the next no migration between populations no selection - all genotypes reproduce with equal success Basic Relations two alleles at a gene - A and a frequency of the A allele = p frequency of the a allele = q p q q p Hardy Weinberg Equation Genotype frequencies are given by the equation: p (AA) + (Aa) + q (aa) = 1 This equation can be generated in two ways. Since each person has two alleles at a gene, the distribution of possibilities at the gene is equal to the square of the allele possibilities or p (A) + q (AA) + (Aa) + (aa) Any person is the result of the union of two gametes which have the probability of containing a specific allele which is equal to the allele frequency or this can be diagrammed as a Punnett square p (A) q (a) p (A) pq (Aa) q (a) pq (Aa) which can be summed to (AA) + (Aa) + (aa) Calculation of allele frequencies Recessive traits : If the frequency of a recessive trait (such as CF or PKU) is known, it is possible to calculate allele frequencies and genotype frequencies using the Hardy Weinberg equation and its assumptions as follows:

17. Genetics Series of articles about canine color genetics, population genetics, inbreeding and references to other internet canine genetics resources. http://bowlingsite.mcf.com/Genetics/Genetics.html

Animal Genetics Internet articles by Sue Ann Bowling (Note that many are off site.) Basic Genetics (still under construction - how genes work, dominant, incompletely dominant and recessive genes, breeding probabilities, Punnett squares, etc.) Part I , single locus Part II , multiple Loci Part III , linkage and crossing over Part IV , relationship of traits to genes (single locus) Part V, relationship of traits to genes (complex inheritance) Test breeding I : to determine whether a dog carries a recessive gene Test breeding II : to test whether a gene is at a particular locus Test breeding III: to determine the genetics of a trait Population Genetics (also still under construction.) How selection of different kinds can change the overall genetic makeup of a breeding population. Part I , selecting against an undesirable gene when gene frequency is relatively low Part II , Reducing a high gene frequency while retaining genetic diversity Inbreeding and line breeding . What are the effects on the genome? Definitions and effects Coefficients of Inbreeding for ROM Shetland Sheepdogs (text) Foundation stock for ROM Shetland Sheepdogs (and effectively for all US Shetland Sheepdogs) Coefficients of inbreeding for ROM Shetland Sheepdogs (table of actual numbers, going back to the foundation stock.)

18. EvolDir These pages are for evolutionary biologists (population genetics, and related fields). http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

19. Population Genetics Made Simple it is helpful to have some background in population genetics. We give a brief survey of some of the points of population genetics most relevant for this http://www.cs.unc.edu/~plaisted/ce/genetics.html

Population Genetics Made Simple David A. Plaisted In order to understand discussions about evolution, even from a creationist viewpoint, it is helpful to have some background in population genetics. We give a brief survey of some of the points of population genetics most relevant for this purpose. The characteristics of organisms are determined by their genetic material (DNA), and random mutations (changes) in the DNA can result in slight changes in organisms. As these accumulate, there can be changes in organisms, resulting in evolution. Population genetics attempts to analyze this process mathematically. Harmful mutations result in organisms less likely to survive, and so these mutations tend to be eliminated from the population (group of organisms in a species). Beneficial mutations also tend to be eliminated by chance, but less often, and tend to be preserved. As these accumulate, the species can gradually adapt to its environment. Neutral mutations are generally eliminated, curiously, but sometimes can spread to the whole population. We then say that the mutation has fixed in the population. The rate of evolution is the rate at which mutations fix in the population. These can be either beneficial or neutral mutations. If the offspring have on the average one harmful mutation each, then the population will degenerate; this is called "error catastrophe." This puts a bound on how many non-neutral mutations can occur per generation. It cannot be much more than about one per generation, and in fact, it must be significantly less, since most non-neutral mutations are harmful.

20. How Humans Evolved - Welcome! A general introduction to natural selection and population genetics, human behavior and mating, and the fossil record. Includes quizzes. http://www.wwnorton.com/college/anthro/bioanth/

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