21. European Bioinformatics Institute Portal for research and services in bioinformatics, with databases of nucleic acid and protein sequences, and macromolecular structures from the http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

22. BioMed Central | BMC Bioinformatics Welcome to BMC bioinformatics published by BioMed Central. BMC bioinformaticspublishes original research articles in all aspects of computational methods http://www.biomedcentral.com/bmcbioinformatics/

home journals A-Z subject areas advanced search ... my BioMed Central Quick Search BMC Bioinformatics BioMed Central PubMed Central PubMed Jump to article BMC Bioinformatics Home About this journal Editorial board Archive Advanced search ... Supplements Editor-in-Chief, BMC -series titles Peter Newmark Editorial Director, Biology Theodora Bloom Welcome to BMC Bioinformatics published by BioMed Central BMC Bioinformatics publishes original research articles in all aspects of computational methods used in the analysis and annotation of sequences and structures, as well as all other areas of computational biology. BMC Bioinformatics (ISSN 1471-2105) is indexed/tracked/covered by PubMed, MEDLINE, BIOSIS, CAS, Scopus, EMBASE, ISI and Google Scholar. Finding SNPs in sequences of deep coverage BMC Bioinformatics An improved method for identifying single nucleotide polymorphisms with allele frequencies can efficiently handle thousands of sequences from the same genome location by using pairwise alignments instead of mulitple sequence alignments. Sources of variation in microarrays BMC Bioinformatics Variation in Affymetrix GeneChip microarrays was mostly (between one half and two thirds) due to biological variation, with around a quarter due to labeling, and with under 14% being the result of differences in hybridization.

23. 123genomics - A Genomics, Proteomics And Bioinformatics Knowledge Base A genomics and bioinformatics knowledge base with information on companies, careers, courses, meetings, databases, sequence analysis, news, diseases, mutation, snp, and microarray. http://www.123genomics.com/

Check news in Genomics and Bioinformatics. Learn about biotech industry and investors. Find a hot job in genomics or bioinformatics. Post your resume, look for head hunters. Locate a college or university offering courses in Genomics and or Bioinformatics. Locate a short courses or training in this area. Locate an organization or an association. Find associations annual meetings. Locate a meeting or conference. Register for meetings, submit your abstract. Find scientific journals and articles. Bibliographic databases. Learn programming and biocomputing information. Find free softwares, other related resources. Find businesses in genomics, bioinformatics, proteomics, microarray and related area. Venture capitals and funds. Industry information Other Resources Don't find what you are looking for? Check here. Patents, clinical trials, drugs, chemicals, etc. Learning New to this field? Learn more about genomics and bioinformatics. Sequence Databases Find sequence repositories for DNA, RNA, proteins, genomic, and other databases. Sequence Analysis sequence comparisons and alignment; Exon

24. The RCSB Protein Data Bank Center at the University of California, San Diego two members of the Research Collaboratory for Structural bioinformatics (RCSB). http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

25. Bioinformatics Group Research School of Biological Sciences. Researches both molecular bioinformaticsand biodiversity informatics. http://life.anu.edu.au/

ANU Home HORUS Staff Home Students ... RSBS Research School of Biological Sciences RSBS External Skip Navigation Search the ANU Website Handbook Admin Areas Phone List Staff Email Student Email Mail Archives for RSBS Navigation Bar Home About RSBS Collaborative Links Services ... Staff Directory Latest News News Job Opportunities Student Opportunities Quick Launch Access to Intranet Web Email Site Search Advanced Current research Student Opportunities Genomic Interactions We are studying the processes involved in plant meristem development and in plant responses to bacterial infection. As a team, we take an integrated approach to plant biology using a wide range of techniques including genetics, molecular biology, biochemistry, proteomics, cell biology and bioinformatics. We use two interacting well characterised model organisms - the legume Medicago truncatula and the soil bacteria Sinorhizobium meliloti to enable the role of specific genes, gene products and signalling molecules regulating growth and development to be assessed.

26. Paolo Frasconi's Home Page Universit  di Firenze. Machine learning for sequential and structured data, bioinformatics, text and natural language, pattern recognition. http://www.dsi.unifi.it/~paolo

Paolo Frasconi Associate Professor of Computer Science Machine Learning and Neural Networks Group Dipartimento di Sistemi e Informatica Research Interests Machine Learning Kernels on logical representations. The aim is to bridge statistical learning and symbolic approaches such as Inductive Logic Programming. Kernels on Prolog Proof Trees compare two instances by comparing the corresponding execution traces of a special visitor program that allows the incorporation of background knowledge ( Passerini, Frasconi De Raedt, 2005 ). The method uses kernels on Prolog ground terms ) as a sub-component. Declarative kernels are based on mereotopology (the logical foundation of parts, wholes, and places) and allow to program, in a declarative style and possibly exploiting background knowledge, what parthood and connection relations should be used to specify the kernel ( Frasconi et al., 2005 Kernels on discrete data structures (sequences and graphs): Weighted Decomposition Kernels Menchetti et al., 2005 Error correcting output codes for multiclass margin-based classifiers ( Passerini et al. 2004

27. The Institute For Genomic Research Primary research interests are in structural, functional and comparative analysis of genomes and gene products. Features databases, gene indices http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

28. ExPASy - Biochemical Pathways Digitized version of wall charts courtesy Boehringer Mannheim et al, divided into Metabolic Pathways and Cellular and Molecular Processes, maintained by the Swiss Institute of bioinformatics, Geneva, Switzerland. http://www.expasy.org/cgi-bin/search-biochem-index

ExPASy Home page Site Map Search ExPASy Contact us ENZYME Search Swiss-Prot/TrEMBL Swiss-Prot/TrEMBL (full text) PROSITE SWISS-2DPAGE ENZYME NEWT Taxonomy HAMAP families ExPASy web site for The ExPASy Server requires Javascript to be fully functional. You may not see all the information available for this page (More information) Biochemical Pathways This page gives access to the digitized version of the Roche Applied Science "Biochemical Pathways" wall chart. Please note that the publishing company Elsevier GmbH, Slevogtstr. 3 - 5 69126 Heidelberg Germany, owns the rights for commercial applications of the Biochemical Pathways. If you wish to use any of the information obtained from this site commercially please contact Ms. Ina Schibel at Elsevier GmbH for approval. Note that the Biochemical Pathway posters are no longer available as a paper copy from Roche. Please do NOT email ExPASy staff with enquiries on this subject. Keyword Search Please enter one or more keyword(s) or partial word(s). For example, you may type Oxoacyl . You will then be given a list of all matching entries of the "Biochemical Pathways" wall chart. If you enter more than one keyword, only the entries matching all keywords will be listed.

29. Ensembl Genome Browser Ensembl is a joint project between EMBLEBI and the Sanger Centre to develop a distributed software system which produces and maintains automatic http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

30. The RCSB Protein Data Bank Diego Supercomputer Center at the University of California, San Diego twomembers of the Research Collaboratory for Structural bioinformatics (RCSB). http://www.rcsb.org/pdb/

DEPOSIT data DOWNLOAD files browse LINKS BETA TEST new features ... PDBML/XML files Current Holdings 32598 Structures Last Update: 13-Sep-2005 PDB Statistics ... Cholera Toxin The Protein Data Bank (PDB) is operated by Rutgers, The State University of New Jersey and the San Diego Supercomputer Center at the University of California, San Diego two members of the Research Collaboratory for Structural Bioinformatics (RCSB) Welcome to the PDB, the single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data. RCSB Home wwPDB Home Contact Us Help Did you find what you wanted? ABOUT PDB NEW FEATURES USER GUIDES ... EDUCATION Search the Archive Enter a PDB ID or keyword Query Tutorial PDB ID Authors Full Text Search match exact word remove similar sequences search Web pages and structures SearchLite keyword search form with examples SearchFields customizable search form Status Search find entries awaiting release News Complete News Newsletter pdb-l Archive Subscribe 13-Sep-2005 RCSB PDB Poster Prize Awarded at IUCr Meeting [MORE...]

31. Bioinfo_glossary.html Alphabetical listing of terms defined related to gene sequencing, informatics and applied molecular biology. http://www.library.csi.cuny.edu/~davis/Bio_326/bioinfo_glossary.html

Bioinformatics Glossary A B C D E ... Z Accession number An identifier supplied by the curators of the major biological databases upon submission of a novel entry that uniquely identifies that sequence (or other) entry. Active site The amino acid residues at the catalytic site of an enzyme. These residues provide the binding and activation energy needed to place the substrate into its transition state and bridge the energy barrier of the reaction undergoing catalysis Adenine A purine base found in DNA and RNA Agents Independent, autonomous, software modules that can search the Internet for data or content pertinent to a particular application, such as a gene, protein, or biological system. Agricultural biotechnology (AgBio) The application of rDNA technology to agriculturally important plants and organisms. Algorithm A series of steps defining a procedure or formula for solving a problem, that can be coded into a programming language and executed. Bioinformatics algorithms typically are used to process, store, analyze, visualize and make predictions from biological data. Alignment The result of a comparison of two or more gene or protein sequences in order to determine their degree of base or amino acid similarity. Sequence alignments are used to determine the similarity, homology, function or other degree of relatedness between two or more genes or gene products.

32. Molecular Discovery Ltd. Producer of GRID, a program for determining energetically favorable binding sites on molecules of known structure, and other tools to derive high quality 3D descriptors with the purpose to link StructureBased Drug Design, Chemoinformatics and bioinformatics. http://www.moldiscovery.com/

@import url("css/layout.css"); @import url("css/content.css"); @import url("css/docbook.css"); world leaders in chemoinformatics and services to pharmaceutical companies Home Software Support Technology and focus ... About us Friday 26 Aug 2005 17:58 Update: VolSurf 4.1.4 An updated VolSurf package for Linux and IRIX is available for download . The list of changes is available here Thursday 30 Dec 2004 18:53 Update: MetaSite 2.5.3 An updated version of the MetaSite programmes has been released. This release fixes a few minor issues with the conformational sampling and introduces a few improvements in the fragment recognition routines. Distribution packages for Linux, IRIX and Windows are available from the download page Wednesday 01 Dec 2004 15:21 Release: MetaSite 2.5.0 A new release of the MetaSite programme is available for download. Various usability features have been introduced: 2D depiction of the imported substrates is now supported, together with direct printing of the predicted sites of metabolism. Also, it is now possible to export the predicted results as SD files. Installation packages for IRIX, Linux and Windows platforms are available from the

33. The International Society For Computational Biology See bioinformatics Books or click below to purchase books and products now Search WWW Search www.iscb.org http://tmsyn.wc.ask.com/r?t=an&s=hb&uid=24312681243126812&sid=343126

34. BioPlanet - Bioinformatics Jobs, Bioinformatics Job, Bioinformatics Conference, BIOPLANET THE bioinformatics HOMEPAGE. The BIOPLANET bioinformatics INDEX ®is Down -0.4% today at 12467. Top bioinformatics News, Powered by http://www.bioplanet.com/

Forums Jobs CVs Chat ... Tutorial Bioinformatics Bestsellers (See Top 20) Bioinformatics and Functional Genomics by Jonathan Pevsner Price: Bioinformatics: Sequence and Genome Analysis by David W. Mount Price: Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, Third Edition by Andreas D. Baxevanis Price: Bioinformatics for Dummies by Jean-Michel Claverie Price: Statistical Methods in Bioinformatics : An Introduction (Statistics for Biology and Health) by Warren J. Ewens Price: Welcome to Bioplanet the bioinformatics homepage Latest Bioinformatics Topics from the Planet Forums Bioinformatics PhD search : by Tara seeking a Bioinformatic Programmer position : by tattasunde Bioinformatician/Sequence analyst looking for : by mathieu Technical Questions how to extract domain/motif info given a prot : by leizhengde Jobs Opportunity Programmer II, Scientific Appli : by jlowey Technical Questions mapman/genmapp : by wusiwug Jobs MicroArray Database curator EBI : by parkinson Technical Questions Mapping unigene number to gene ontology ids : by Korbi Jobs Immediate Opening for a Microarray Database A : by Jobs Sr. Oracle Clinical Programmer - Raleigh/Durh

35. The Bioinformatics Resource CCP11 was established to foster bioinformatics in the UK research community. It is titled bioinformatics and Disease and will be held on Friday 30th http://www.hgmp.mrc.ac.uk/CCP11/index.jsp

36. Canadian Bioinformatics Help Desk -- Directory Of Canadian Researchers A directory listing Canadian life science researchers, many of whom are sponsored by Genome Canada. http://www.gchelpdesk.ualberta.ca/bioinfo_directory/

Home Bioinformatics Platform User Survey Advanced ACGC New Montreal Bioinformatics Platform Seminar New Montreal Seminar Links Free Montreal Bioinformatics Platform Workshop New Montreal Workshop Links New Presentation Brochure Bioinformatics Needs Survey Report Services ... Access the Directory New Our Latest Newsletter Newsletter Archive Explore Our Links Bioinformatics.ca Links Directory ... Why Register? Not Logged In Login Genome Canada Glossary Genome Canada FAQ Search the Directory (Search by name, affiliation, specialty, or Genome Canada project) Browse by Region: British Columbia Prairie Ontario Québec ... Canada (All Regions) Directory Information for Canada Name Affiliation Specialty Genome Canada Project Rayhan Abdulmughnee Systems Engineer, University of Nottingham Bioinformatics Sherif Abou Elela Associate Professor of Molecular Biology, Faculty of Medicine, Universite de Sherbrooke RNA, RNomics, dsRNA, ribonucleases, RNase III, molecular biology, biochemistry, yeast biology and genetics, ribosome, translation, snoRNA, rRNA, splicing, PNA, RNA delivery, antisense, RNAi High-throughput Functional Genomics Using Modified Nucleic Acid (MoNA) Technologies Andrew Ah-Seng Summer Student, The Sun Center of Excellence of Visual Genomics, University of Calgary

37. Integrative BioInformatics - Home Page Leveraging technology to bridge cell biology and genomics by providing computational biology and database technology software and consulting services for modeling complex biological problems faced by scientists in public and private research institutes, biotechnology companies, and universities. http://www.integrativebioinformatics.com

ProcessDB Leveraging Technology to bridge Cell Biology and Genomics Bioinformatics : Research, development or application of computational tools and approaches for expanding the use of biological, medical, behavioral or health data, including those to acquire, store, organize, archive, analyze or visualize such data. Computational Biology : The development and application of data-analytical and theoretical methods, mathematical modeling and computational simulation techniques to the study of biological, behavioral, and social systems. (NIH Biomedical Information Science and Technology Initiative) Science is made up of facts just as a house is built up of stones, but a collection of facts is no more a science than a heap of stones is a house, H. Poincare Our Mission Integrative Bioinformatics is a scientific consulting services company with expertise in the modelling of cellular systems. We are supported by an NIH Small Business Innovative Research Grant. In addition to our consulting services, we offer a software product

38. HGMP-RC Bioinformatics The RFCGR bioinformatics Division gives registered users access to a comprehensive A priority of bioinformatics staff is keeping these up to date and http://www.hgmp.mrc.ac.uk/Bioinformatics/

39. Bioinformatics & Biological Computing Home bioinformatics and Biological Computing. Welcome to the website of thebioinformatics and Biological Computing Unit at the Weizmann Institute of Science http://bioportal.weizmann.ac.il/

writeHeader("home"); Advancing biological research using computational and mathematical tools Welcome to the website of the Bioinformatics and Biological Computing Unit at the Weizmann Institute of Science Bioinformatics uses computation to advance the scientific understanding of living systems. The people in our unit help life scientists use computing tools to make biological research more productive. We teach courses, present workshops and seminars, provide individual consulting, and make computing tools and computing power available. We're a resource for novices as well as those who have experience using bioinformatics tools. Learn more about our work Our website contains a variety of information about bioinformatics resources available at the Weizmann Institute and elsewhere. Click on a link on the blue bar above to find out about tools, training, and consulting that we offer, as well as related activities. Sign up for our email list to stay in touch with local bioinformatics updates. Always feel free to contact us if you have questions!

40. Microarray And Bioinformatics Blog Microarray and bioinformatics News Source http://www.dnamicroarrays.blogspot.com

@import url("http://www.blogger.com/css/blog_controls.css"); @import url("http://www.blogger.com/dyn-css/authorization.css?blogID=8976172"); @import url(http://www.blogger.com/css/navbar/main.css); @import url(http://www.blogger.com/css/navbar/1.css); BlogThis! Friday, May 13, 2005 My New Blog Hello all! I will not be able to post here from now onwards, I installed wordpress at my site and i will blog there. My new blog is located at blog.dnamicroarrays.info . Thanks Read more! posted by dnamicro at 5/13/2005 01:27:00 AM 1 comments Tuesday, May 03, 2005 Molecular Systems Biology- Open Access Journal Molecular Systems Biology is an open access journal from EMBO and NPG group, and i think this is the first open access journal from EMBO and NPG group. Molecular Systems Biology is an online journal and its published weekly. Authors can submit the data in XML format, Systems Biology MArkup Lnaguage (SBML). Molecular Systems Biology covers all aspects of the rapidly growing and interdisciplinary field of systems biology at the molecular level, and will attract and help shape the highest quality research in the evolving areas of genomics, proteomics, metabolomics, bioinformatics, microbial systems, and the integration of cell signaling and regulatory networks. The journal will work together with the systems biology community to establish guidelines, standards and metrics for global complex datasets. URL:http://www.nature.com/msb/index.html

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